Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AC073130.3-201ENST00000624389 2278 ntBASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 MIR1199-201ENST00000621445 119 ntBASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
VPS13DQ5THJ4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 AL022326.1-202ENST00000641533 845 ntBASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MKNK2P1-201ENST00000437526 628 ntBASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 SIRPAP1-201ENST00000448467 1770 ntBASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
VPS13DQ5THJ4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC12.08□□□□□ -0.47
VPS13DQ5THJ4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC12.08□□□□□ -0.47
VPS13DQ5THJ4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
VPS13DQ5THJ4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 AC018845.2-201ENST00000568326 409 ntBASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 AL589182.2-201ENST00000619332 1049 ntBASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 RHOQP3-201ENST00000437982 621 ntBASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
VPS13DQ5THJ4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms