Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 RFPL4AP1-201ENST00000530883 850 ntBASIC22.68■■□□□ 1.22
RC3H1Q5TC82 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 MIR4469-201ENST00000583919 79 ntBASIC22.68■■□□□ 1.22
RC3H1Q5TC82 C20orf181-201ENST00000623918 480 ntBASIC22.68■■□□□ 1.22
RC3H1Q5TC82 AC073592.5-201ENST00000624854 528 ntBASIC22.68■■□□□ 1.22
RC3H1Q5TC82 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
RC3H1Q5TC82 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 ALG1L5P-201ENST00000482043 771 ntBASIC22.67■■□□□ 1.22
RC3H1Q5TC82 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RC3H1Q5TC82 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 VN2R19P-201ENST00000442399 1052 ntBASIC22.66■■□□□ 1.22
RC3H1Q5TC82 HCG4B-203ENST00000450128 991 ntBASIC22.66■■□□□ 1.22
RC3H1Q5TC82 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 CYMP-203ENST00000474680 1263 ntBASIC22.66■■□□□ 1.22
RC3H1Q5TC82 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H1Q5TC82 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 AC006504.4-201ENST00000592118 1568 ntBASIC22.65■■□□□ 1.22
RC3H1Q5TC82 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 AL020989.1-201ENST00000422979 469 ntBASIC22.65■■□□□ 1.22
RC3H1Q5TC82 MKNK2P1-201ENST00000437526 628 ntBASIC22.65■■□□□ 1.22
RC3H1Q5TC82 PRSS29P-201ENST00000440800 595 ntBASIC22.65■■□□□ 1.22
RC3H1Q5TC82 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 SNHG9-202ENST00000564014 471 ntBASIC22.65■■□□□ 1.22
RC3H1Q5TC82 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H1Q5TC82 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
RC3H1Q5TC82 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H1Q5TC82 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H1Q5TC82 AC005332.7-201ENST00000614046 2005 ntBASIC22.64■■□□□ 1.22
RC3H1Q5TC82 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 ELK2BP-201ENST00000415014 1224 ntBASIC22.64■■□□□ 1.21
RC3H1Q5TC82 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC22.64■■□□□ 1.21
RC3H1Q5TC82 IGHV3-65-201ENST00000523210 341 ntBASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms