Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP39Q53GS9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 AC090340.1-201ENST00000620778 4980 ntBASIC18.37■□□□□ 0.53
USP39Q53GS9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
USP39Q53GS9 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.37■□□□□ 0.53
USP39Q53GS9 KRT18P58-201ENST00000527480 1120 ntBASIC18.37■□□□□ 0.53
USP39Q53GS9 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
USP39Q53GS9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
USP39Q53GS9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
USP39Q53GS9 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.37■□□□□ 0.53
USP39Q53GS9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.37■□□□□ 0.53
USP39Q53GS9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
USP39Q53GS9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP39Q53GS9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.37■□□□□ 0.53
USP39Q53GS9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.36■□□□□ 0.53
USP39Q53GS9 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.36■□□□□ 0.53
USP39Q53GS9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.36■□□□□ 0.53
USP39Q53GS9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.36■□□□□ 0.53
USP39Q53GS9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
USP39Q53GS9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.36■□□□□ 0.53
USP39Q53GS9 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.36■□□□□ 0.53
USP39Q53GS9 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.36■□□□□ 0.53
USP39Q53GS9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.36■□□□□ 0.53
USP39Q53GS9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.36■□□□□ 0.53
USP39Q53GS9 RNA5SP419-201ENST00000515908 135 ntBASIC18.36■□□□□ 0.53
USP39Q53GS9 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.36■□□□□ 0.53
USP39Q53GS9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP39Q53GS9 AC068587.9-201ENST00000641814 219 ntBASIC18.36■□□□□ 0.53
USP39Q53GS9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
USP39Q53GS9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
USP39Q53GS9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 Z98044.1-201ENST00000632503 1764 ntBASIC18.35■□□□□ 0.53
USP39Q53GS9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.35■□□□□ 0.53
USP39Q53GS9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
USP39Q53GS9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 NEFHP1-201ENST00000412845 2629 ntBASIC18.35■□□□□ 0.53
USP39Q53GS9 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.35■□□□□ 0.53
USP39Q53GS9 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.35■□□□□ 0.53
USP39Q53GS9 AC096582.2-201ENST00000510860 516 ntBASIC18.35■□□□□ 0.53
USP39Q53GS9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.35■□□□□ 0.53
USP39Q53GS9 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.35■□□□□ 0.53
USP39Q53GS9 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.35■□□□□ 0.53
USP39Q53GS9 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.35■□□□□ 0.53
USP39Q53GS9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.35■□□□□ 0.53
USP39Q53GS9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.35■□□□□ 0.53
USP39Q53GS9 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.35■□□□□ 0.53
USP39Q53GS9 BNIP3P18-201ENST00000593976 575 ntBASIC18.35■□□□□ 0.53
USP39Q53GS9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.35■□□□□ 0.53
USP39Q53GS9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP39Q53GS9 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 AL031598.1-201ENST00000561511 1773 ntBASIC18.35■□□□□ 0.53
USP39Q53GS9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP39Q53GS9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.34■□□□□ 0.53
USP39Q53GS9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP39Q53GS9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms