Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC58Q4VC31 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 KRASP1-201ENST00000407852 552 ntBASIC16.21■□□□□ 0.19
CCDC58Q4VC31 KSR1P1-201ENST00000446298 240 ntBASIC16.21■□□□□ 0.19
CCDC58Q4VC31 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 AC026271.3-201ENST00000571884 352 ntBASIC16.21■□□□□ 0.19
CCDC58Q4VC31 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC58Q4VC31 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CCDC58Q4VC31 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 MIR564-202ENST00000385049 94 ntBASIC16.2■□□□□ 0.18
CCDC58Q4VC31 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 AC133681.1-201ENST00000465482 601 ntBASIC16.2■□□□□ 0.18
CCDC58Q4VC31 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.2■□□□□ 0.18
CCDC58Q4VC31 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 AL023875.1-201ENST00000640777 796 ntBASIC16.2■□□□□ 0.18
CCDC58Q4VC31 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 PHGDH-209ENST00000641074 1780 ntBASIC16.2■□□□□ 0.18
CCDC58Q4VC31 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC58Q4VC31 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms