Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LONRF3Q496Y0 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 AC104390.1-201ENST00000555663 520 ntBASIC20.58■□□□□ 0.89
LONRF3Q496Y0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LONRF3Q496Y0 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 GNAS-203ENST00000306120 1878 ntBASIC20.58■□□□□ 0.88
LONRF3Q496Y0 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LONRF3Q496Y0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 PCED1CP-201ENST00000419887 785 ntBASIC20.57■□□□□ 0.88
LONRF3Q496Y0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 HOMER2P1-201ENST00000455653 964 ntBASIC20.57■□□□□ 0.88
LONRF3Q496Y0 FAM86EP-206ENST00000510506 987 ntBASIC20.57■□□□□ 0.88
LONRF3Q496Y0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AC091076.1-201ENST00000610741 619 ntBASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AC112497.1-201ENST00000624824 639 ntBASIC20.57■□□□□ 0.88
LONRF3Q496Y0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.57■□□□□ 0.88
LONRF3Q496Y0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.56■□□□□ 0.88
LONRF3Q496Y0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 LTB4R2-202ENST00000528054 3092 ntBASIC20.56■□□□□ 0.88
LONRF3Q496Y0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LONRF3Q496Y0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms