Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC88AQ3V6T2 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 AC092364.2-202ENST00000597012 1073 ntBASIC22.02■■□□□ 1.12
CCDC88AQ3V6T2 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 SDHAP2-201ENST00000455183 2001 ntBASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC22.01■■□□□ 1.11
CCDC88AQ3V6T2 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 MIR770-201ENST00000390219 98 ntBASIC22■■□□□ 1.11
CCDC88AQ3V6T2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 AL096865.1-201ENST00000606796 927 ntBASIC22■■□□□ 1.11
CCDC88AQ3V6T2 AL078644.1-201ENST00000609881 752 ntBASIC22■■□□□ 1.11
CCDC88AQ3V6T2 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 ADK-206ENST00000541550 2222 ntTSL 2 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 CD82-202ENST00000342935 967 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
CCDC88AQ3V6T2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 AC005082.1-201ENST00000413042 2259 ntBASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 ELL2P1-201ENST00000413990 1906 ntBASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 MKNK2P1-201ENST00000437526 628 ntBASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 AC108073.2-201ENST00000464002 357 ntBASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CCDC88AQ3V6T2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 AC136632.2-201ENST00000512891 861 ntBASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 AP000344.2-201ENST00000512987 629 ntBASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 AC009154.2-201ENST00000621177 724 ntBASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CCDC88AQ3V6T2 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
CCDC88AQ3V6T2 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms