Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 YBX2P1-201ENST00000394192 760 ntBASIC15.54■□□□□ 0.08
ABCA4P78363 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.54■□□□□ 0.08
ABCA4P78363 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
ABCA4P78363 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.54■□□□□ 0.08
ABCA4P78363 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ABCA4P78363 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.53■□□□□ 0.08
ABCA4P78363 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.53■□□□□ 0.08
ABCA4P78363 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.53■□□□□ 0.08
ABCA4P78363 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.53■□□□□ 0.08
ABCA4P78363 AC068472.1-201ENST00000474589 881 ntBASIC15.53■□□□□ 0.08
ABCA4P78363 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.53■□□□□ 0.08
ABCA4P78363 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
ABCA4P78363 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.53■□□□□ 0.08
ABCA4P78363 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ABCA4P78363 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.53■□□□□ 0.08
ABCA4P78363 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.52■□□□□ 0.08
ABCA4P78363 RCN1P2-201ENST00000398357 915 ntBASIC15.52■□□□□ 0.08
ABCA4P78363 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.52■□□□□ 0.08
ABCA4P78363 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 AC012640.2-201ENST00000561606 901 ntBASIC15.52■□□□□ 0.08
ABCA4P78363 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.52■□□□□ 0.08
ABCA4P78363 AC009154.2-201ENST00000621177 724 ntBASIC15.52■□□□□ 0.08
ABCA4P78363 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.52■□□□□ 0.08
ABCA4P78363 LINC00602-201ENST00000629776 2065 ntBASIC15.52■□□□□ 0.08
ABCA4P78363 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.52■□□□□ 0.08
ABCA4P78363 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
ABCA4P78363 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
ABCA4P78363 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
ABCA4P78363 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.52■□□□□ 0.07
ABCA4P78363 RPSAP43-201ENST00000402237 625 ntBASIC15.52■□□□□ 0.07
ABCA4P78363 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.52■□□□□ 0.07
ABCA4P78363 AC116407.3-201ENST00000623905 1129 ntBASIC15.52■□□□□ 0.07
ABCA4P78363 AC134684.3-201ENST00000641758 218 ntBASIC15.52■□□□□ 0.07
ABCA4P78363 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.07
ABCA4P78363 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC15.52■□□□□ 0.07
ABCA4P78363 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
ABCA4P78363 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
ABCA4P78363 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
ABCA4P78363 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.51■□□□□ 0.07
ABCA4P78363 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
ABCA4P78363 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.51■□□□□ 0.07
ABCA4P78363 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
ABCA4P78363 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.51■□□□□ 0.07
ABCA4P78363 AC211486.1-202ENST00000416371 468 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.51■□□□□ 0.07
ABCA4P78363 AC211476.1-201ENST00000503899 468 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.51■□□□□ 0.07
ABCA4P78363 FAM215A-202ENST00000632077 792 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
ABCA4P78363 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
ABCA4P78363 AC104109.2-201ENST00000602919 1418 ntBASIC15.51■□□□□ 0.07
ABCA4P78363 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
ABCA4P78363 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms