Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.25■□□□□ 0.99
SCN4AP35499 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.25■□□□□ 0.99
SCN4AP35499 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.25■□□□□ 0.99
SCN4AP35499 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.25■□□□□ 0.99
SCN4AP35499 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.25■□□□□ 0.99
SCN4AP35499 LINC00628-201ENST00000628516 1289 ntBASIC21.25■□□□□ 0.99
SCN4AP35499 AC007064.4-201ENST00000637740 555 ntBASIC21.25■□□□□ 0.99
SCN4AP35499 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SCN4AP35499 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.25■□□□□ 0.99
SCN4AP35499 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 AC125437.2-201ENST00000625180 2167 ntBASIC21.24■□□□□ 0.99
SCN4AP35499 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SCN4AP35499 AC112907.3-201ENST00000577781 2400 ntBASIC21.24■□□□□ 0.99
SCN4AP35499 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.24■□□□□ 0.99
SCN4AP35499 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.24■□□□□ 0.99
SCN4AP35499 AC096734.2-201ENST00000562054 433 ntBASIC21.24■□□□□ 0.99
SCN4AP35499 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.24■□□□□ 0.99
SCN4AP35499 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.24■□□□□ 0.99
SCN4AP35499 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
SCN4AP35499 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SCN4AP35499 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SCN4AP35499 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SCN4AP35499 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.23■□□□□ 0.99
SCN4AP35499 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.23■□□□□ 0.99
SCN4AP35499 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.23■□□□□ 0.99
SCN4AP35499 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
SCN4AP35499 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.23■□□□□ 0.99
SCN4AP35499 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.23■□□□□ 0.99
SCN4AP35499 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SCN4AP35499 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC21.22■□□□□ 0.99
SCN4AP35499 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.22■□□□□ 0.99
SCN4AP35499 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.22■□□□□ 0.99
SCN4AP35499 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.22■□□□□ 0.99
SCN4AP35499 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SCN4AP35499 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.22■□□□□ 0.99
SCN4AP35499 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.22■□□□□ 0.99
SCN4AP35499 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.22■□□□□ 0.99
SCN4AP35499 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
SCN4AP35499 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 AC093520.2-201ENST00000561830 333 ntBASIC21.22■□□□□ 0.99
SCN4AP35499 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.22■□□□□ 0.99
SCN4AP35499 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SCN4AP35499 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.21■□□□□ 0.99
SCN4AP35499 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SCN4AP35499 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SCN4AP35499 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.21■□□□□ 0.99
SCN4AP35499 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SCN4AP35499 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SCN4AP35499 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.21■□□□□ 0.99
SCN4AP35499 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SCN4AP35499 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
SCN4AP35499 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SCN4AP35499 AC236430.1-201ENST00000402231 743 ntBASIC21.2■□□□□ 0.98
SCN4AP35499 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.2■□□□□ 0.98
SCN4AP35499 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.2■□□□□ 0.98
SCN4AP35499 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms