Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC23.54■■□□□ 1.36
RXRBP28702 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 WRB-204ENST00000398753 699 ntTSL 3 BASIC23.54■■□□□ 1.36
RXRBP28702 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 AC112191.1-201ENST00000523689 701 ntBASIC23.54■■□□□ 1.36
RXRBP28702 BAD-207ENST00000544785 525 ntTSL 3 BASIC23.54■■□□□ 1.36
RXRBP28702 COQ9-214ENST00000567933 882 ntTSL 3 BASIC23.54■■□□□ 1.36
RXRBP28702 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC23.54■■□□□ 1.36
RXRBP28702 AC026120.1-201ENST00000611536 926 ntBASIC23.54■■□□□ 1.36
RXRBP28702 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
RXRBP28702 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
RXRBP28702 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
RXRBP28702 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RXRBP28702 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC23.53■■□□□ 1.36
RXRBP28702 AC006116.8-202ENST00000587620 1550 ntBASIC23.53■■□□□ 1.36
RXRBP28702 CU639417.3-201ENST00000624240 1404 ntBASIC23.53■■□□□ 1.36
RXRBP28702 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
RXRBP28702 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC23.53■■□□□ 1.36
RXRBP28702 SERBP1P5-201ENST00000510079 1181 ntBASIC23.53■■□□□ 1.36
RXRBP28702 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC23.53■■□□□ 1.36
RXRBP28702 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
RXRBP28702 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
RXRBP28702 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RXRBP28702 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC23.52■■□□□ 1.36
RXRBP28702 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.52■■□□□ 1.36
RXRBP28702 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC23.52■■□□□ 1.36
RXRBP28702 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC23.52■■□□□ 1.36
RXRBP28702 RPS2P32-201ENST00000439199 892 ntBASIC23.52■■□□□ 1.36
RXRBP28702 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC23.52■■□□□ 1.36
RXRBP28702 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC23.52■■□□□ 1.36
RXRBP28702 GGTLC5P-201ENST00000617623 998 ntBASIC23.52■■□□□ 1.36
RXRBP28702 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
RXRBP28702 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
RXRBP28702 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
RXRBP28702 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.35
RXRBP28702 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 AC092919.2-201ENST00000623631 1645 ntBASIC23.51■■□□□ 1.35
RXRBP28702 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 RPL30-202ENST00000396070 440 ntTSL 2 BASIC23.51■■□□□ 1.35
RXRBP28702 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC23.51■■□□□ 1.35
RXRBP28702 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC23.51■■□□□ 1.35
RXRBP28702 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC23.51■■□□□ 1.35
RXRBP28702 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC23.51■■□□□ 1.35
RXRBP28702 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC23.51■■□□□ 1.35
RXRBP28702 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.51■■□□□ 1.35
RXRBP28702 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
RXRBP28702 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
RXRBP28702 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
RXRBP28702 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
RXRBP28702 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.5■■□□□ 1.35
RXRBP28702 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
RXRBP28702 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC23.5■■□□□ 1.35
RXRBP28702 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC23.5■■□□□ 1.35
RXRBP28702 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC23.5■■□□□ 1.35
RXRBP28702 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC23.5■■□□□ 1.35
RXRBP28702 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC23.5■■□□□ 1.35
RXRBP28702 HILS1-202ENST00000545329 423 ntBASIC23.5■■□□□ 1.35
RXRBP28702 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RXRBP28702 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.5■■□□□ 1.35
RXRBP28702 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC23.5■■□□□ 1.35
RXRBP28702 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms