Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 CR769767.2-201ENST00000622735 460 ntBASIC13.82□□□□□ -0.2
HLA-DMBP28068 AC097493.4-201ENST00000641197 219 ntBASIC13.82□□□□□ -0.2
HLA-DMBP28068 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 FAM210CP-201ENST00000445714 574 ntBASIC13.81□□□□□ -0.2
HLA-DMBP28068 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 FITM1-202ENST00000559294 800 ntBASIC13.81□□□□□ -0.2
HLA-DMBP28068 NAPSB-206ENST00000562112 1266 ntBASIC13.81□□□□□ -0.2
HLA-DMBP28068 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
HLA-DMBP28068 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 KRT8P9-201ENST00000558927 1449 ntBASIC13.81□□□□□ -0.2
HLA-DMBP28068 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HLA-DMBP28068 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 LINC01126-201ENST00000623515 1646 ntBASIC13.8□□□□□ -0.2
HLA-DMBP28068 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 MIR149-201ENST00000384879 89 ntBASIC13.8□□□□□ -0.2
HLA-DMBP28068 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 AP005242.2-201ENST00000580065 1175 ntBASIC13.8□□□□□ -0.2
HLA-DMBP28068 AL023803.3-201ENST00000615559 522 ntBASIC13.8□□□□□ -0.2
HLA-DMBP28068 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HLA-DMBP28068 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
HLA-DMBP28068 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms