Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 AC005336.2-201ENST00000593183 939 ntBASIC19.04■□□□□ 0.64
BDNFP23560 AC093677.2-201ENST00000600169 1863 ntBASIC19.04■□□□□ 0.64
BDNFP23560 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 AL121772.3-201ENST00000610840 674 ntBASIC19.04■□□□□ 0.64
BDNFP23560 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.04■□□□□ 0.64
BDNFP23560 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
BDNFP23560 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
BDNFP23560 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.04■□□□□ 0.64
BDNFP23560 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
BDNFP23560 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.03■□□□□ 0.64
BDNFP23560 AC090164.3-201ENST00000610780 2143 ntBASIC19.03■□□□□ 0.64
BDNFP23560 AL096828.2-201ENST00000567259 1965 ntBASIC19.03■□□□□ 0.64
BDNFP23560 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.03■□□□□ 0.64
BDNFP23560 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.03■□□□□ 0.64
BDNFP23560 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 KRT18P31-201ENST00000506277 1292 ntBASIC19.03■□□□□ 0.64
BDNFP23560 AC091304.2-201ENST00000564639 760 ntBASIC19.03■□□□□ 0.64
BDNFP23560 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.03■□□□□ 0.64
BDNFP23560 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.03■□□□□ 0.64
BDNFP23560 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
BDNFP23560 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
BDNFP23560 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.02■□□□□ 0.64
BDNFP23560 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
BDNFP23560 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 AC009113.1-201ENST00000570267 2443 ntBASIC19.02■□□□□ 0.64
BDNFP23560 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.02■□□□□ 0.64
BDNFP23560 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.02■□□□□ 0.64
BDNFP23560 AC112698.1-201ENST00000510299 916 ntBASIC19.02■□□□□ 0.64
BDNFP23560 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
BDNFP23560 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.02■□□□□ 0.64
BDNFP23560 AL691432.3-201ENST00000621860 400 ntBASIC19.02■□□□□ 0.64
BDNFP23560 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
BDNFP23560 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
BDNFP23560 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
BDNFP23560 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BDNFP23560 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
BDNFP23560 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
BDNFP23560 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BDNFP23560 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.02■□□□□ 0.63
BDNFP23560 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
BDNFP23560 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
BDNFP23560 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
BDNFP23560 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.01■□□□□ 0.63
BDNFP23560 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
BDNFP23560 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
BDNFP23560 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
BDNFP23560 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms