Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SL602P-201ENST00000578326 324 ntBASIC18.55■□□□□ 0.56
COL9A1P20849 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.55■□□□□ 0.56
COL9A1P20849 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
COL9A1P20849 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL9A1P20849 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.55■□□□□ 0.56
COL9A1P20849 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
COL9A1P20849 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
COL9A1P20849 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.54■□□□□ 0.56
COL9A1P20849 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL9A1P20849 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL9A1P20849 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL9A1P20849 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
COL9A1P20849 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.54■□□□□ 0.56
COL9A1P20849 PDPK2P-202ENST00000562415 1191 ntBASIC18.54■□□□□ 0.56
COL9A1P20849 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC18.54■□□□□ 0.56
COL9A1P20849 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.54■□□□□ 0.56
COL9A1P20849 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC18.54■□□□□ 0.56
COL9A1P20849 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.54■□□□□ 0.56
COL9A1P20849 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 AP005117.1-201ENST00000584346 1413 ntBASIC18.54■□□□□ 0.56
COL9A1P20849 AL356309.3-201ENST00000624132 1934 ntBASIC18.54■□□□□ 0.56
COL9A1P20849 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
COL9A1P20849 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.54■□□□□ 0.56
COL9A1P20849 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.54■□□□□ 0.56
COL9A1P20849 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL9A1P20849 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
COL9A1P20849 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.53■□□□□ 0.56
COL9A1P20849 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 AL031432.2-201ENST00000566714 459 ntBASIC18.53■□□□□ 0.56
COL9A1P20849 AL928711.1-201ENST00000570165 459 ntBASIC18.53■□□□□ 0.56
COL9A1P20849 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.53■□□□□ 0.56
COL9A1P20849 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.53■□□□□ 0.56
COL9A1P20849 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL9A1P20849 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL9A1P20849 AL163051.1-201ENST00000569214 1512 ntBASIC18.53■□□□□ 0.56
COL9A1P20849 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL9A1P20849 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL9A1P20849 KRT89P-201ENST00000620027 1478 ntBASIC18.52■□□□□ 0.56
COL9A1P20849 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL9A1P20849 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.52■□□□□ 0.56
COL9A1P20849 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
COL9A1P20849 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.52■□□□□ 0.56
COL9A1P20849 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.52■□□□□ 0.56
COL9A1P20849 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC18.52■□□□□ 0.56
COL9A1P20849 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.52■□□□□ 0.56
COL9A1P20849 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 AC107918.4-202ENST00000641623 219 ntBASIC18.52■□□□□ 0.56
COL9A1P20849 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL9A1P20849 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL9A1P20849 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.52■□□□□ 0.56
COL9A1P20849 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL9A1P20849 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
COL9A1P20849 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL9A1P20849 AL049812.1-201ENST00000432563 2267 ntBASIC18.52■□□□□ 0.55
COL9A1P20849 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COL9A1P20849 AC099343.3-201ENST00000605834 2503 ntBASIC18.52■□□□□ 0.55
COL9A1P20849 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.52■□□□□ 0.55
COL9A1P20849 TP73-AS1-210ENST00000637775 1455 ntBASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms