Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL2A1P02458 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.01■□□□□ 0.95
COL2A1P02458 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.01■□□□□ 0.95
COL2A1P02458 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.01■□□□□ 0.95
COL2A1P02458 PMS2P7-201ENST00000506558 1336 ntBASIC21.01■□□□□ 0.95
COL2A1P02458 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL2A1P02458 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL2A1P02458 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL2A1P02458 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC21.01■□□□□ 0.95
COL2A1P02458 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.01■□□□□ 0.95
COL2A1P02458 RNA5SP415-201ENST00000517246 115 ntBASIC21.01■□□□□ 0.95
COL2A1P02458 TERC-201ENST00000602385 541 ntBASIC21.01■□□□□ 0.95
COL2A1P02458 AC140113.2-201ENST00000604370 208 ntBASIC21.01■□□□□ 0.95
COL2A1P02458 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21.01■□□□□ 0.95
COL2A1P02458 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 AP002414.3-201ENST00000589352 1468 ntBASIC21■□□□□ 0.95
COL2A1P02458 SLC25A24-204ENST00000569674 2357 ntBASIC21■□□□□ 0.95
COL2A1P02458 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21■□□□□ 0.95
COL2A1P02458 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 INIP-202ENST00000374236 874 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 AC073621.1-201ENST00000392730 636 ntBASIC21■□□□□ 0.95
COL2A1P02458 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 AC006557.2-201ENST00000592985 1240 ntBASIC21■□□□□ 0.95
COL2A1P02458 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL2A1P02458 AC027601.4-201ENST00000611259 610 ntBASIC21■□□□□ 0.95
COL2A1P02458 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
COL2A1P02458 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21■□□□□ 0.95
COL2A1P02458 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.99■□□□□ 0.95
COL2A1P02458 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL2A1P02458 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.99■□□□□ 0.95
COL2A1P02458 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.99■□□□□ 0.95
COL2A1P02458 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.99■□□□□ 0.95
COL2A1P02458 AC093677.2-201ENST00000600169 1863 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL2A1P02458 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL2A1P02458 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.99■□□□□ 0.95
COL2A1P02458 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.99■□□□□ 0.95
COL2A1P02458 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.99■□□□□ 0.95
COL2A1P02458 BX842568.4-201ENST00000421222 227 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 MED15P5-201ENST00000423150 992 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 AC019129.2-201ENST00000609837 1235 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 AC073592.5-201ENST00000624854 528 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 AL096828.2-201ENST00000567259 1965 ntBASIC20.99■□□□□ 0.95
COL2A1P02458 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL2A1P02458 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
COL2A1P02458 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
COL2A1P02458 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.98■□□□□ 0.95
COL2A1P02458 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.98■□□□□ 0.95
COL2A1P02458 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.98■□□□□ 0.95
COL2A1P02458 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.98■□□□□ 0.95
COL2A1P02458 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC20.98■□□□□ 0.95
COL2A1P02458 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 AL356488.2-201ENST00000602755 427 ntBASIC20.98■□□□□ 0.95
COL2A1P02458 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.98■□□□□ 0.95
COL2A1P02458 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.98■□□□□ 0.95
COL2A1P02458 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL2A1P02458 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms