Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
PRKNO60260 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.84■□□□□ 0.29
PRKNO60260 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.84■□□□□ 0.29
PRKNO60260 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.84■□□□□ 0.29
PRKNO60260 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.84■□□□□ 0.29
PRKNO60260 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.84■□□□□ 0.29
PRKNO60260 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
PRKNO60260 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.84■□□□□ 0.29
PRKNO60260 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 AL096828.2-201ENST00000567259 1965 ntBASIC16.84■□□□□ 0.29
PRKNO60260 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKNO60260 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.83■□□□□ 0.29
PRKNO60260 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.83■□□□□ 0.29
PRKNO60260 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PRKNO60260 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.83■□□□□ 0.29
PRKNO60260 HTR7P1-202ENST00000624664 4411 ntBASIC16.83■□□□□ 0.29
PRKNO60260 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PRKNO60260 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.83■□□□□ 0.28
PRKNO60260 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.83■□□□□ 0.28
PRKNO60260 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.83■□□□□ 0.28
PRKNO60260 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKNO60260 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
PRKNO60260 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 KRT18P1-202ENST00000452408 1331 ntBASIC16.82■□□□□ 0.28
PRKNO60260 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 KRT18P56-201ENST00000507275 550 ntBASIC16.82■□□□□ 0.28
PRKNO60260 AC113404.2-201ENST00000507884 177 ntBASIC16.82■□□□□ 0.28
PRKNO60260 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.82■□□□□ 0.28
PRKNO60260 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.82■□□□□ 0.28
PRKNO60260 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.82■□□□□ 0.28
PRKNO60260 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.82■□□□□ 0.28
PRKNO60260 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKNO60260 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKNO60260 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
PRKNO60260 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PRKNO60260 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PRKNO60260 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PRKNO60260 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PRKNO60260 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PRKNO60260 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.81■□□□□ 0.28
PRKNO60260 TPSP2-201ENST00000561760 610 ntBASIC16.81■□□□□ 0.28
PRKNO60260 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PRKNO60260 IGHV3-41-201ENST00000613121 348 ntBASIC16.81■□□□□ 0.28
PRKNO60260 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
PRKNO60260 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.81■□□□□ 0.28
PRKNO60260 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
PRKNO60260 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms