Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.21■■■□□ 2.43
RPAP1Q9BWH6 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.43
RPAP1Q9BWH6 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
RPAP1Q9BWH6 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
RPAP1Q9BWH6 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.19■■■□□ 2.42
RPAP1Q9BWH6 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
RPAP1Q9BWH6 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
RPAP1Q9BWH6 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 ECEL1P2-201ENST00000461596 1295 ntBASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.18■■■□□ 2.42
RPAP1Q9BWH6 AL157400.5-201ENST00000507624 621 ntBASIC30.17■■■□□ 2.42
RPAP1Q9BWH6 AC126177.7-201ENST00000547904 679 ntBASIC30.17■■■□□ 2.42
RPAP1Q9BWH6 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RPAP1Q9BWH6 AL121749.1-202ENST00000609313 2153 ntBASIC30.17■■■□□ 2.42
RPAP1Q9BWH6 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RPAP1Q9BWH6 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
RPAP1Q9BWH6 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
RPAP1Q9BWH6 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
RPAP1Q9BWH6 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RPAP1Q9BWH6 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RPAP1Q9BWH6 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 KRT18P60-201ENST00000312876 1297 ntBASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.12■■■□□ 2.41
RPAP1Q9BWH6 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RPAP1Q9BWH6 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC30.11■■■□□ 2.41
RPAP1Q9BWH6 AL033527.3-201ENST00000566366 1196 ntBASIC30.11■■■□□ 2.41
RPAP1Q9BWH6 MOB2-207ENST00000614710 705 ntTSL 5 BASIC30.11■■■□□ 2.41
RPAP1Q9BWH6 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RPAP1Q9BWH6 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RPAP1Q9BWH6 SHF-208ENST00000560734 1731 ntTSL 3 BASIC30.1■■■□□ 2.41
RPAP1Q9BWH6 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
RPAP1Q9BWH6 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RPAP1Q9BWH6 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RPAP1Q9BWH6 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
RPAP1Q9BWH6 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RPAP1Q9BWH6 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
RPAP1Q9BWH6 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.08■■■□□ 2.41
RPAP1Q9BWH6 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RPAP1Q9BWH6 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.08■■■□□ 2.41
RPAP1Q9BWH6 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC30.08■■■□□ 2.41
RPAP1Q9BWH6 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RPAP1Q9BWH6 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC30.06■■■□□ 2.4
RPAP1Q9BWH6 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RPAP1Q9BWH6 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.06■■■□□ 2.4
RPAP1Q9BWH6 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.05■■■□□ 2.4
RPAP1Q9BWH6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
RPAP1Q9BWH6 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
RPAP1Q9BWH6 TSPY13P-201ENST00000338964 914 ntBASIC30.04■■■□□ 2.4
RPAP1Q9BWH6 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30.04■■■□□ 2.4
RPAP1Q9BWH6 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC30.03■■■□□ 2.4
RPAP1Q9BWH6 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
RPAP1Q9BWH6 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RPAP1Q9BWH6 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC30.01■■■□□ 2.39
RPAP1Q9BWH6 AC004987.1-201ENST00000428627 508 ntBASIC30.01■■■□□ 2.39
RPAP1Q9BWH6 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RPAP1Q9BWH6 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30■■■□□ 2.39
RPAP1Q9BWH6 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RPAP1Q9BWH6 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30■■■□□ 2.39
RPAP1Q9BWH6 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC30■■■□□ 2.39
RPAP1Q9BWH6 ATP5G2P3-201ENST00000429083 425 ntBASIC30■■■□□ 2.39
RPAP1Q9BWH6 AC007029.1-201ENST00000604183 313 ntBASIC30■■■□□ 2.39
RPAP1Q9BWH6 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RPAP1Q9BWH6 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RPAP1Q9BWH6 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RPAP1Q9BWH6 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
RPAP1Q9BWH6 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC29.98■■■□□ 2.39
RPAP1Q9BWH6 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC29.98■■■□□ 2.39
RPAP1Q9BWH6 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
RPAP1Q9BWH6 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC29.98■■■□□ 2.39
RPAP1Q9BWH6 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RPAP1Q9BWH6 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RPAP1Q9BWH6 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms