Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RPUSD3Q6P087 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.67■■□□□ 1.22
RPUSD3Q6P087 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RPUSD3Q6P087 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.66■■□□□ 1.22
RPUSD3Q6P087 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RPUSD3Q6P087 AP002414.2-202ENST00000590929 1450 ntBASIC22.66■■□□□ 1.22
RPUSD3Q6P087 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RPUSD3Q6P087 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RPUSD3Q6P087 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RPUSD3Q6P087 DUX4L18-201ENST00000553347 1267 ntBASIC22.64■■□□□ 1.21
RPUSD3Q6P087 MIR3960-201ENST00000583311 91 ntBASIC22.64■■□□□ 1.21
RPUSD3Q6P087 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC22.64■■□□□ 1.21
RPUSD3Q6P087 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
RPUSD3Q6P087 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC22.63■■□□□ 1.21
RPUSD3Q6P087 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RPUSD3Q6P087 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RPUSD3Q6P087 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.63■■□□□ 1.21
RPUSD3Q6P087 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 AC093536.1-201ENST00000569153 554 ntBASIC22.62■■□□□ 1.21
RPUSD3Q6P087 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 RAP2CP1-202ENST00000605179 643 ntBASIC22.62■■□□□ 1.21
RPUSD3Q6P087 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 AL139393.2-201ENST00000608721 2025 ntBASIC22.62■■□□□ 1.21
RPUSD3Q6P087 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RPUSD3Q6P087 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.61■■□□□ 1.21
RPUSD3Q6P087 AC074183.2-201ENST00000623112 922 ntBASIC22.61■■□□□ 1.21
RPUSD3Q6P087 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
RPUSD3Q6P087 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
RPUSD3Q6P087 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RPUSD3Q6P087 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.6■■□□□ 1.21
RPUSD3Q6P087 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.6■■□□□ 1.21
RPUSD3Q6P087 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
RPUSD3Q6P087 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.59■■□□□ 1.21
RPUSD3Q6P087 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.59■■□□□ 1.21
RPUSD3Q6P087 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.59■■□□□ 1.21
RPUSD3Q6P087 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.58■■□□□ 1.21
RPUSD3Q6P087 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
RPUSD3Q6P087 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
RPUSD3Q6P087 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.21
RPUSD3Q6P087 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC22.58■■□□□ 1.21
RPUSD3Q6P087 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RPUSD3Q6P087 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.57■■□□□ 1.2
RPUSD3Q6P087 DUX4L9-201ENST00000449051 1259 ntBASIC22.57■■□□□ 1.2
RPUSD3Q6P087 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
RPUSD3Q6P087 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
RPUSD3Q6P087 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
RPUSD3Q6P087 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
RPUSD3Q6P087 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
RPUSD3Q6P087 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.56■■□□□ 1.2
RPUSD3Q6P087 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.56■■□□□ 1.2
RPUSD3Q6P087 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RPUSD3Q6P087 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
RPUSD3Q6P087 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
RPUSD3Q6P087 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RPUSD3Q6P087 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RPUSD3Q6P087 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RPUSD3Q6P087 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RPUSD3Q6P087 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.53■■□□□ 1.2
RPUSD3Q6P087 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
RPUSD3Q6P087 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RPUSD3Q6P087 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
RPUSD3Q6P087 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
RPUSD3Q6P087 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.52■■□□□ 1.2
RPUSD3Q6P087 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
RPUSD3Q6P087 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RPUSD3Q6P087 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
RPUSD3Q6P087 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RPUSD3Q6P087 BHLHE23-202ENST00000612929 1109 ntBASIC22.51■■□□□ 1.19
RPUSD3Q6P087 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RPUSD3Q6P087 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RPUSD3Q6P087 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.51■■□□□ 1.19
RPUSD3Q6P087 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RPUSD3Q6P087 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms