Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM4Q9C037 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM4Q9C037 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 AC139887.4-201ENST00000607877 719 ntBASIC18.12■□□□□ 0.49
TRIM4Q9C037 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM4Q9C037 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRIM4Q9C037 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM4Q9C037 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM4Q9C037 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 PCED1CP-201ENST00000419887 785 ntBASIC18.11■□□□□ 0.49
TRIM4Q9C037 AC092647.4-201ENST00000457211 535 ntBASIC18.11■□□□□ 0.49
TRIM4Q9C037 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 AL691432.3-201ENST00000621860 400 ntBASIC18.11■□□□□ 0.49
TRIM4Q9C037 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
TRIM4Q9C037 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM4Q9C037 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 AC018695.7-201ENST00000624587 2492 ntBASIC18.1■□□□□ 0.49
TRIM4Q9C037 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 INGX-201ENST00000359239 846 ntBASIC18.1■□□□□ 0.49
TRIM4Q9C037 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM4Q9C037 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM4Q9C037 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 IRX1P1-201ENST00000438849 1838 ntBASIC18.09■□□□□ 0.49
TRIM4Q9C037 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM4Q9C037 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.09■□□□□ 0.49
TRIM4Q9C037 IER3-202ENST00000376377 1350 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms