Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 AL671277.1-201ENST00000429656 993 ntBASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 AC132938.2-201ENST00000579188 680 ntBASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 AL591163.1-201ENST00000641757 987 ntBASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL25A1Q9BXS0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 AL512384.1-201ENST00000406683 331 ntBASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 AC079140.1-201ENST00000508039 487 ntBASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 FAM86C2P-203ENST00000528684 1004 ntBASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 AC084121.4-201ENST00000641598 221 ntBASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 AF228730.8-201ENST00000642140 221 ntBASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL25A1Q9BXS0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 NCF1C-201ENST00000438382 1427 ntBASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 KRT8P50-201ENST00000562022 1438 ntBASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 AD001527.2-201ENST00000622994 785 ntBASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 AL805961.1-202ENST00000641562 540 ntBASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.17■□□□□ 0.5
COL25A1Q9BXS0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 SPDYE7P-202ENST00000420373 878 ntBASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.16■□□□□ 0.5
COL25A1Q9BXS0 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms