Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 MIR4785-201ENST00000585005 73 ntBASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 CYP2D8P-201ENST00000433633 1490 ntBASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TRIM56Q9BRZ2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 LINC01126-201ENST00000623515 1646 ntBASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SLC25A1P2-201ENST00000430693 912 ntBASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 KRT18P23-201ENST00000435622 1283 ntBASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 AC007663.1-201ENST00000438948 1240 ntBASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 LINC00896-202ENST00000609602 2128 ntBASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
TRIM56Q9BRZ2 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 AC012317.2-201ENST00000623305 2251 ntBASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRIM56Q9BRZ2 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms