Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
PAAF1Q9BRP4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.27■□□□□ 0.68
PAAF1Q9BRP4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.27■□□□□ 0.67
PAAF1Q9BRP4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
PAAF1Q9BRP4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.27■□□□□ 0.67
PAAF1Q9BRP4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PAAF1Q9BRP4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PAAF1Q9BRP4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AL022342.1-201ENST00000400363 863 ntBASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 FGFR3P6-201ENST00000457012 610 ntBASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AL355877.3-201ENST00000622820 899 ntBASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PAAF1Q9BRP4 AC093010.1-201ENST00000473625 1624 ntBASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 MTDHP3-201ENST00000594186 672 ntBASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PAAF1Q9BRP4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 TNXA-203ENST00000507684 2038 ntBASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
PAAF1Q9BRP4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms