Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 MIR662-201ENST00000384847 95 ntBASIC16.19■□□□□ 0.18
USB1Q9BQ65 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 AL157888.1-201ENST00000631930 593 ntBASIC16.19■□□□□ 0.18
USB1Q9BQ65 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USB1Q9BQ65 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
USB1Q9BQ65 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 AC124067.4-201ENST00000519691 2379 ntBASIC16.18■□□□□ 0.18
USB1Q9BQ65 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 Z98044.1-201ENST00000632503 1764 ntBASIC16.18■□□□□ 0.18
USB1Q9BQ65 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
USB1Q9BQ65 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
USB1Q9BQ65 AL391807.1-203ENST00000604392 2365 ntBASIC16.18■□□□□ 0.18
USB1Q9BQ65 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AL138781.2-201ENST00000617896 1843 ntBASIC16.17■□□□□ 0.18
USB1Q9BQ65 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AC018470.1-201ENST00000624790 3129 ntBASIC16.17■□□□□ 0.18
USB1Q9BQ65 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 PRORSD1P-202ENST00000563365 2154 ntBASIC16.17■□□□□ 0.18
USB1Q9BQ65 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
USB1Q9BQ65 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 AC093525.10-201ENST00000625130 1569 ntBASIC16.17■□□□□ 0.18
USB1Q9BQ65 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
USB1Q9BQ65 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.16■□□□□ 0.18
USB1Q9BQ65 KRT89P-201ENST00000620027 1478 ntBASIC16.16■□□□□ 0.18
USB1Q9BQ65 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
USB1Q9BQ65 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
USB1Q9BQ65 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms