Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
COL12A1Q99715 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.75■□□□□ 0.11
COL12A1Q99715 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.75■□□□□ 0.11
COL12A1Q99715 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.75■□□□□ 0.11
COL12A1Q99715 AC105339.1-204ENST00000636249 355 ntBASIC15.75■□□□□ 0.11
COL12A1Q99715 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.75■□□□□ 0.11
COL12A1Q99715 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.75■□□□□ 0.11
COL12A1Q99715 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.75■□□□□ 0.11
COL12A1Q99715 AL158211.5-201ENST00000623583 2518 ntBASIC15.75■□□□□ 0.11
COL12A1Q99715 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.75■□□□□ 0.11
COL12A1Q99715 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
COL12A1Q99715 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL12A1Q99715 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.75■□□□□ 0.11
COL12A1Q99715 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.74■□□□□ 0.11
COL12A1Q99715 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL12A1Q99715 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.74■□□□□ 0.11
COL12A1Q99715 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.74■□□□□ 0.11
COL12A1Q99715 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 AC004877.2-201ENST00000623941 599 ntBASIC15.74■□□□□ 0.11
COL12A1Q99715 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL12A1Q99715 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.74■□□□□ 0.11
COL12A1Q99715 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL12A1Q99715 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.74■□□□□ 0.11
COL12A1Q99715 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
COL12A1Q99715 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.74■□□□□ 0.11
COL12A1Q99715 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.74■□□□□ 0.11
COL12A1Q99715 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.74■□□□□ 0.11
COL12A1Q99715 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL12A1Q99715 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.74■□□□□ 0.11
COL12A1Q99715 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.73■□□□□ 0.11
COL12A1Q99715 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC15.73■□□□□ 0.11
COL12A1Q99715 ATP5G2P4-201ENST00000442175 420 ntBASIC15.73■□□□□ 0.11
COL12A1Q99715 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.73■□□□□ 0.11
COL12A1Q99715 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
COL12A1Q99715 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.73■□□□□ 0.11
COL12A1Q99715 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 FAM207CP-201ENST00000443486 507 ntBASIC15.73■□□□□ 0.11
COL12A1Q99715 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.73■□□□□ 0.11
COL12A1Q99715 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.73■□□□□ 0.11
COL12A1Q99715 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.73■□□□□ 0.11
COL12A1Q99715 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
COL12A1Q99715 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.72■□□□□ 0.11
COL12A1Q99715 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.72■□□□□ 0.11
COL12A1Q99715 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
COL12A1Q99715 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.72■□□□□ 0.11
COL12A1Q99715 OR7E47P-204ENST00000575924 449 ntBASIC15.72■□□□□ 0.11
COL12A1Q99715 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
COL12A1Q99715 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.72■□□□□ 0.11
COL12A1Q99715 AC125437.2-201ENST00000625180 2167 ntBASIC15.72■□□□□ 0.11
COL12A1Q99715 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms