Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 AC106820.2-201ENST00000563775 3264 ntBASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 KRT8P9-201ENST00000558927 1449 ntBASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 C2orf69P3-201ENST00000565542 1120 ntBASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 AC112497.1-201ENST00000624824 639 ntBASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CLHC1Q8NHS4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLHC1Q8NHS4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 KRT8P7-201ENST00000533003 1432 ntBASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLHC1Q8NHS4 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms