Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
VPS8Q8N3P4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 AC079781.3-201ENST00000449110 356 ntBASIC28.2■■■□□ 2.11
VPS8Q8N3P4 EMBP1-201ENST00000458200 901 ntBASIC28.2■■■□□ 2.11
VPS8Q8N3P4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC28.2■■■□□ 2.11
VPS8Q8N3P4 AL031008.1-201ENST00000619963 541 ntBASIC28.2■■■□□ 2.11
VPS8Q8N3P4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
VPS8Q8N3P4 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 SAPCD2P3-201ENST00000455031 850 ntBASIC28.19■■■□□ 2.1
VPS8Q8N3P4 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 AP000997.3-201ENST00000623333 2250 ntBASIC28.19■■■□□ 2.1
VPS8Q8N3P4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 AC097374.2-201ENST00000618617 1306 ntBASIC28.19■■■□□ 2.1
VPS8Q8N3P4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
VPS8Q8N3P4 ABALON-201ENST00000629058 1903 ntBASIC28.18■■■□□ 2.1
VPS8Q8N3P4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC022898.2-201ENST00000616822 1312 ntBASIC28.18■■■□□ 2.1
VPS8Q8N3P4 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC28.18■■■□□ 2.1
VPS8Q8N3P4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 AC135050.7-201ENST00000624508 2218 ntBASIC28.17■■■□□ 2.1
VPS8Q8N3P4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
VPS8Q8N3P4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms