Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 AL353692.3-201ENST00000407031 1396 ntBASIC17.71■□□□□ 0.43
VRK3Q8IV63 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 ARMC10P1-201ENST00000313754 855 ntBASIC17.71■□□□□ 0.43
VRK3Q8IV63 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 GPR32P1-201ENST00000601788 811 ntBASIC17.71■□□□□ 0.43
VRK3Q8IV63 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VRK3Q8IV63 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.71■□□□□ 0.43
VRK3Q8IV63 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.71■□□□□ 0.42
VRK3Q8IV63 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.71■□□□□ 0.42
VRK3Q8IV63 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 FLJ13224-201ENST00000313737 1514 ntBASIC17.7■□□□□ 0.42
VRK3Q8IV63 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VRK3Q8IV63 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VRK3Q8IV63 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 PCED1CP-201ENST00000419887 785 ntBASIC17.69■□□□□ 0.42
VRK3Q8IV63 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.69■□□□□ 0.42
VRK3Q8IV63 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VRK3Q8IV63 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms