Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 TSPY20P-201ENST00000450910 630 ntBASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 BX088651.1-201ENST00000540551 451 ntBASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 AL355312.1-201ENST00000407115 2176 ntBASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LRIF1Q5T3J3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.08■□□□□ 0.33
LRIF1Q5T3J3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CCR12P-201ENST00000446203 998 ntBASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 RBM17P1-201ENST00000453646 1190 ntBASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 AP003071.4-201ENST00000562276 1284 ntBASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 AC010240.3-201ENST00000607688 395 ntBASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
LRIF1Q5T3J3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AL023806.1-201ENST00000603994 1649 ntBASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 UNC93B2-201ENST00000285383 730 ntBASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AC007663.1-201ENST00000438948 1240 ntBASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AC009053.2-201ENST00000563701 2365 ntBASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 AC133963.1-201ENST00000504166 1679 ntBASIC17.07■□□□□ 0.32
LRIF1Q5T3J3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms