Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AP000997.3-201ENST00000623333 2250 ntBASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AL024508.2-201ENST00000607749 1894 ntBASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 KRT18P22-201ENST00000402024 1347 ntBASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC40Q4G0X9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
CCDC40Q4G0X9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.79
CCDC40Q4G0X9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 NEK4P2-201ENST00000580004 1012 ntBASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC40Q4G0X9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 AC093010.1-201ENST00000473625 1624 ntBASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC40Q4G0X9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms