Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 AL590627.1-203ENST00000421194 1026 ntBASIC19.24■□□□□ 0.67
USP41Q3LFD5 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 ANO7L1-203ENST00000602586 1720 ntBASIC19.24■□□□□ 0.67
USP41Q3LFD5 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.24■□□□□ 0.67
USP41Q3LFD5 AC125634.1-201ENST00000438758 1403 ntBASIC19.24■□□□□ 0.67
USP41Q3LFD5 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP41Q3LFD5 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 RBM17P3-201ENST00000417687 1192 ntBASIC19.23■□□□□ 0.67
USP41Q3LFD5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 RNA5SP419-201ENST00000515908 135 ntBASIC19.23■□□□□ 0.67
USP41Q3LFD5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 AL355877.3-201ENST00000622820 899 ntBASIC19.23■□□□□ 0.67
USP41Q3LFD5 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP41Q3LFD5 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.23■□□□□ 0.67
USP41Q3LFD5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 INTS4P1-201ENST00000438455 1935 ntBASIC19.22■□□□□ 0.67
USP41Q3LFD5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 AL031284.1-201ENST00000419297 478 ntBASIC19.22■□□□□ 0.67
USP41Q3LFD5 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.22■□□□□ 0.67
USP41Q3LFD5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP41Q3LFD5 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.21■□□□□ 0.67
USP41Q3LFD5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms