Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL7A1Q02388 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC12.9□□□□□ -0.34
COL7A1Q02388 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
COL7A1Q02388 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC12.89□□□□□ -0.35
COL7A1Q02388 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AC005034.1-201ENST00000426657 489 ntBASIC12.89□□□□□ -0.35
COL7A1Q02388 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AC005593.1-201ENST00000624894 515 ntBASIC12.89□□□□□ -0.35
COL7A1Q02388 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.89□□□□□ -0.35
COL7A1Q02388 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 CBR1-202ENST00000399191 838 ntTSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 PON3-205ENST00000451904 1053 ntTSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC12.89□□□□□ -0.35
COL7A1Q02388 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC12.89□□□□□ -0.35
COL7A1Q02388 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC12.89□□□□□ -0.35
COL7A1Q02388 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL7A1Q02388 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC12.89□□□□□ -0.35
COL7A1Q02388 AC093214.1-201ENST00000511688 1107 ntBASIC12.89□□□□□ -0.35
COL7A1Q02388 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
COL7A1Q02388 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.88□□□□□ -0.35
COL7A1Q02388 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.88□□□□□ -0.35
COL7A1Q02388 DUX4L17-201ENST00000557360 1267 ntBASIC12.88□□□□□ -0.35
COL7A1Q02388 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
COL7A1Q02388 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 EFS-203ENST00000429593 2610 ntTSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL7A1Q02388 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
COL7A1Q02388 IGLL3P-201ENST00000412472 434 ntBASIC12.88□□□□□ -0.35
COL7A1Q02388 VN2R19P-201ENST00000442399 1052 ntBASIC12.88□□□□□ -0.35
COL7A1Q02388 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.88□□□□□ -0.35
COL7A1Q02388 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.88□□□□□ -0.35
COL7A1Q02388 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.88□□□□□ -0.35
COL7A1Q02388 AL513210.1-201ENST00000629608 234 ntBASIC12.88□□□□□ -0.35
COL7A1Q02388 POLI-202ENST00000406285 2030 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 MRPL20P1-201ENST00000400819 433 ntBASIC12.87□□□□□ -0.35
COL7A1Q02388 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 AP005018.1-201ENST00000525475 301 ntBASIC12.87□□□□□ -0.35
COL7A1Q02388 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
COL7A1Q02388 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
COL7A1Q02388 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
COL7A1Q02388 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC12.87□□□□□ -0.35
COL7A1Q02388 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC12.87□□□□□ -0.35
COL7A1Q02388 MTCL1P1-201ENST00000446207 792 ntBASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms