Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GCSHP2-201ENST00000560971 527 ntBASIC16.22■□□□□ 0.19
CLRN1P58418 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 AL031432.5-201ENST00000641059 760 ntBASIC16.22■□□□□ 0.19
CLRN1P58418 AC097493.4-201ENST00000641197 219 ntBASIC16.22■□□□□ 0.19
CLRN1P58418 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 AC138028.4-201ENST00000564984 1845 ntBASIC16.22■□□□□ 0.19
CLRN1P58418 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN1P58418 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.21■□□□□ 0.19
CLRN1P58418 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CLRN1P58418 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.21■□□□□ 0.19
CLRN1P58418 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.21■□□□□ 0.19
CLRN1P58418 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.21■□□□□ 0.19
CLRN1P58418 COX11P1-201ENST00000489116 835 ntBASIC16.21■□□□□ 0.19
CLRN1P58418 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CLRN1P58418 AL157888.1-201ENST00000631930 593 ntBASIC16.21■□□□□ 0.19
CLRN1P58418 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.21■□□□□ 0.19
CLRN1P58418 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
CLRN1P58418 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.21■□□□□ 0.19
CLRN1P58418 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLRN1P58418 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CLRN1P58418 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLRN1P58418 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
CLRN1P58418 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.21■□□□□ 0.18
CLRN1P58418 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
CLRN1P58418 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 AL024508.2-201ENST00000607749 1894 ntBASIC16.2■□□□□ 0.18
CLRN1P58418 LINC01126-201ENST00000623515 1646 ntBASIC16.2■□□□□ 0.18
CLRN1P58418 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
CLRN1P58418 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.2■□□□□ 0.18
CLRN1P58418 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 AC008687.5-201ENST00000593746 558 ntBASIC16.2■□□□□ 0.18
CLRN1P58418 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
CLRN1P58418 LINC01023-201ENST00000606054 436 ntBASIC16.2■□□□□ 0.18
CLRN1P58418 AC012306.2-201ENST00000609350 630 ntBASIC16.2■□□□□ 0.18
CLRN1P58418 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CLRN1P58418 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.2■□□□□ 0.18
CLRN1P58418 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
CLRN1P58418 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLRN1P58418 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CLRN1P58418 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CLRN1P58418 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLRN1P58418 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms