Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRE11P49959 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.12■□□□□ 0.97
MRE11P49959 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRE11P49959 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC21.12■□□□□ 0.97
MRE11P49959 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MRE11P49959 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.12■□□□□ 0.97
MRE11P49959 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 AC008556.1-201ENST00000610908 2040 ntBASIC21.11■□□□□ 0.97
MRE11P49959 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
MRE11P49959 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.11■□□□□ 0.97
MRE11P49959 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.11■□□□□ 0.97
MRE11P49959 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.11■□□□□ 0.97
MRE11P49959 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.11■□□□□ 0.97
MRE11P49959 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
MRE11P49959 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
MRE11P49959 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.11■□□□□ 0.97
MRE11P49959 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.11■□□□□ 0.97
MRE11P49959 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MRE11P49959 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
MRE11P49959 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 AC005521.1-201ENST00000393351 872 ntBASIC21.1■□□□□ 0.97
MRE11P49959 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.1■□□□□ 0.97
MRE11P49959 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.1■□□□□ 0.97
MRE11P49959 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.1■□□□□ 0.97
MRE11P49959 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.1■□□□□ 0.97
MRE11P49959 AC113410.3-201ENST00000623366 203 ntBASIC21.1■□□□□ 0.97
MRE11P49959 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.1■□□□□ 0.97
MRE11P49959 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.1■□□□□ 0.97
MRE11P49959 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
MRE11P49959 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
MRE11P49959 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.1■□□□□ 0.97
MRE11P49959 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
MRE11P49959 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
MRE11P49959 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.09■□□□□ 0.97
MRE11P49959 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 PNMA6B-201ENST00000538162 1200 ntBASIC21.09■□□□□ 0.97
MRE11P49959 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.09■□□□□ 0.97
MRE11P49959 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.09■□□□□ 0.97
MRE11P49959 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.09■□□□□ 0.97
MRE11P49959 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
MRE11P49959 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.09■□□□□ 0.97
MRE11P49959 AC112777.1-201ENST00000540175 1423 ntBASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms