Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC3P19447 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC3P19447 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC3P19447 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.95■□□□□ 0.94
ERCC3P19447 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC3P19447 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
ERCC3P19447 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
ERCC3P19447 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
ERCC3P19447 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 AL590627.1-203ENST00000421194 1026 ntBASIC20.94■□□□□ 0.94
ERCC3P19447 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 RNA5SP419-201ENST00000515908 135 ntBASIC20.94■□□□□ 0.94
ERCC3P19447 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
ERCC3P19447 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ERCC3P19447 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC3P19447 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
ERCC3P19447 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
ERCC3P19447 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.93■□□□□ 0.94
ERCC3P19447 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.93■□□□□ 0.94
ERCC3P19447 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC3P19447 AC096582.2-201ENST00000510860 516 ntBASIC20.93■□□□□ 0.94
ERCC3P19447 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.93■□□□□ 0.94
ERCC3P19447 AC064862.7-201ENST00000604520 867 ntBASIC20.93■□□□□ 0.94
ERCC3P19447 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ERCC3P19447 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 AC083906.6-201ENST00000641366 219 ntBASIC20.93■□□□□ 0.94
ERCC3P19447 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 AC104581.1-202ENST00000635932 2618 ntBASIC20.93■□□□□ 0.94
ERCC3P19447 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ERCC3P19447 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.93■□□□□ 0.94
ERCC3P19447 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
ERCC3P19447 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ERCC3P19447 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
ERCC3P19447 AC009102.3-201ENST00000623118 1491 ntBASIC20.93■□□□□ 0.94
ERCC3P19447 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 FAM197Y8-203ENST00000450145 560 ntBASIC20.92■□□□□ 0.94
ERCC3P19447 AC113404.2-201ENST00000507884 177 ntBASIC20.92■□□□□ 0.94
ERCC3P19447 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.92■□□□□ 0.94
ERCC3P19447 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.92■□□□□ 0.94
ERCC3P19447 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.92■□□□□ 0.94
ERCC3P19447 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC3P19447 AL671883.3-201ENST00000603274 991 ntBASIC20.92■□□□□ 0.94
ERCC3P19447 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC3P19447 AC114341.1-201ENST00000618070 349 ntBASIC20.92■□□□□ 0.94
ERCC3P19447 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ERCC3P19447 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.92■□□□□ 0.94
ERCC3P19447 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ERCC3P19447 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ERCC3P19447 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
ERCC3P19447 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC3P19447 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
ERCC3P19447 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.91■□□□□ 0.94
ERCC3P19447 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ERCC3P19447 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
ERCC3P19447 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms