Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
VCANP13611 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCANP13611 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VCANP13611 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.64■□□□□ 0.57
VCANP13611 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
VCANP13611 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.64■□□□□ 0.57
VCANP13611 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.63■□□□□ 0.57
VCANP13611 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 MIR943-201ENST00000401286 94 ntBASIC18.63■□□□□ 0.57
VCANP13611 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.63■□□□□ 0.57
VCANP13611 BX005266.1-201ENST00000473402 457 ntBASIC18.63■□□□□ 0.57
VCANP13611 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VCANP13611 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.63■□□□□ 0.57
VCANP13611 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
VCANP13611 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.63■□□□□ 0.57
VCANP13611 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.63■□□□□ 0.57
VCANP13611 MIR6805-201ENST00000615055 62 ntBASIC18.63■□□□□ 0.57
VCANP13611 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VCANP13611 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
VCANP13611 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
VCANP13611 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.62■□□□□ 0.57
VCANP13611 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
VCANP13611 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.62■□□□□ 0.57
VCANP13611 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
VCANP13611 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.62■□□□□ 0.57
VCANP13611 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.62■□□□□ 0.57
VCANP13611 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.62■□□□□ 0.57
VCANP13611 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.62■□□□□ 0.57
VCANP13611 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VCANP13611 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.61■□□□□ 0.57
VCANP13611 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.61■□□□□ 0.57
VCANP13611 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.61■□□□□ 0.57
VCANP13611 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.61■□□□□ 0.57
VCANP13611 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.61■□□□□ 0.57
VCANP13611 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.61■□□□□ 0.57
VCANP13611 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.61■□□□□ 0.57
VCANP13611 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VCANP13611 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.61■□□□□ 0.57
VCANP13611 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.61■□□□□ 0.57
VCANP13611 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.61■□□□□ 0.57
VCANP13611 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.61■□□□□ 0.57
VCANP13611 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.6■□□□□ 0.57
VCANP13611 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.6■□□□□ 0.57
VCANP13611 RN7SL692P-201ENST00000464677 288 ntBASIC18.6■□□□□ 0.57
VCANP13611 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.6■□□□□ 0.57
VCANP13611 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VCANP13611 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms