Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.69■□□□□ 0.42
PCNAP12004 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCNAP12004 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
PCNAP12004 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.68■□□□□ 0.42
PCNAP12004 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.68■□□□□ 0.42
PCNAP12004 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.68■□□□□ 0.42
PCNAP12004 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 AC024243.1-201ENST00000609234 778 ntBASIC17.68■□□□□ 0.42
PCNAP12004 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCNAP12004 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.68■□□□□ 0.42
PCNAP12004 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCNAP12004 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
PCNAP12004 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.68■□□□□ 0.42
PCNAP12004 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCNAP12004 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.67■□□□□ 0.42
PCNAP12004 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.67■□□□□ 0.42
PCNAP12004 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.67■□□□□ 0.42
PCNAP12004 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.67■□□□□ 0.42
PCNAP12004 AC104390.1-201ENST00000555663 520 ntBASIC17.67■□□□□ 0.42
PCNAP12004 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.67■□□□□ 0.42
PCNAP12004 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.67■□□□□ 0.42
PCNAP12004 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCNAP12004 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 AC093677.2-201ENST00000600169 1863 ntBASIC17.67■□□□□ 0.42
PCNAP12004 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCNAP12004 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCNAP12004 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 SDHAP2-201ENST00000455183 2001 ntBASIC17.66■□□□□ 0.42
PCNAP12004 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
PCNAP12004 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PCNAP12004 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.66■□□□□ 0.42
PCNAP12004 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.66■□□□□ 0.42
PCNAP12004 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.66■□□□□ 0.42
PCNAP12004 AC009065.1-201ENST00000564055 1225 ntBASIC17.66■□□□□ 0.42
PCNAP12004 AC145285.6-201ENST00000604632 637 ntBASIC17.66■□□□□ 0.42
PCNAP12004 AC133561.5-201ENST00000635547 218 ntBASIC17.66■□□□□ 0.42
PCNAP12004 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCNAP12004 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.66■□□□□ 0.42
PCNAP12004 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCNAP12004 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PCNAP12004 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms