Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.65■□□□□ 0.74
CHRNA1P02708 NKAPP1-205ENST00000585790 367 ntBASIC19.65■□□□□ 0.74
CHRNA1P02708 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 AP000867.4-201ENST00000641616 219 ntBASIC19.65■□□□□ 0.74
CHRNA1P02708 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 ZNF259P1-201ENST00000407656 1365 ntBASIC19.65■□□□□ 0.74
CHRNA1P02708 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CHRNA1P02708 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CHRNA1P02708 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CHRNA1P02708 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.64■□□□□ 0.74
CHRNA1P02708 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CHRNA1P02708 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CHRNA1P02708 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.64■□□□□ 0.74
CHRNA1P02708 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
CHRNA1P02708 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CHRNA1P02708 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.64■□□□□ 0.73
CHRNA1P02708 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.64■□□□□ 0.73
CHRNA1P02708 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 AC145285.3-201ENST00000564603 959 ntBASIC19.64■□□□□ 0.73
CHRNA1P02708 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.64■□□□□ 0.73
CHRNA1P02708 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.64■□□□□ 0.73
CHRNA1P02708 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 TERC-201ENST00000602385 541 ntBASIC19.64■□□□□ 0.73
CHRNA1P02708 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 PMS2P7-201ENST00000506558 1336 ntBASIC19.64■□□□□ 0.73
CHRNA1P02708 AC097374.2-201ENST00000618617 1306 ntBASIC19.64■□□□□ 0.73
CHRNA1P02708 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.73
CHRNA1P02708 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CHRNA1P02708 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.64■□□□□ 0.73
CHRNA1P02708 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.64■□□□□ 0.73
CHRNA1P02708 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CHRNA1P02708 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.63■□□□□ 0.73
CHRNA1P02708 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.63■□□□□ 0.73
CHRNA1P02708 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.63■□□□□ 0.73
CHRNA1P02708 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 OR7E14P-202ENST00000530490 1290 ntBASIC19.63■□□□□ 0.73
CHRNA1P02708 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.63■□□□□ 0.73
CHRNA1P02708 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CHRNA1P02708 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.63■□□□□ 0.73
CHRNA1P02708 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHRNA1P02708 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.63■□□□□ 0.73
CHRNA1P02708 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.62■□□□□ 0.73
CHRNA1P02708 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CHRNA1P02708 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.62■□□□□ 0.73
CHRNA1P02708 AC104109.2-201ENST00000602919 1418 ntBASIC19.62■□□□□ 0.73
CHRNA1P02708 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 FAM220CP-201ENST00000395253 831 ntBASIC19.62■□□□□ 0.73
CHRNA1P02708 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.62■□□□□ 0.73
CHRNA1P02708 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.62■□□□□ 0.73
CHRNA1P02708 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.62■□□□□ 0.73
CHRNA1P02708 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 AL139288.1-201ENST00000623748 933 ntBASIC19.62■□□□□ 0.73
CHRNA1P02708 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.62■□□□□ 0.73
CHRNA1P02708 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
CHRNA1P02708 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.62■□□□□ 0.73
CHRNA1P02708 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
CHRNA1P02708 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHRNA1P02708 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.62■□□□□ 0.73
CHRNA1P02708 HLA-J-201ENST00000462773 1622 ntBASIC19.62■□□□□ 0.73
CHRNA1P02708 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.61■□□□□ 0.73
CHRNA1P02708 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHRNA1P02708 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms