Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.41■□□□□ 0.54
HOXC11O43248 AP001269.4-201ENST00000609611 512 ntBASIC18.41■□□□□ 0.54
HOXC11O43248 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.41■□□□□ 0.54
HOXC11O43248 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC11O43248 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HOXC11O43248 AC126763.1-201ENST00000552015 2118 ntBASIC18.41■□□□□ 0.54
HOXC11O43248 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC11O43248 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC11O43248 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC11O43248 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.41■□□□□ 0.54
HOXC11O43248 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HOXC11O43248 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC11O43248 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC11O43248 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HOXC11O43248 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 BX640515.1-201ENST00000617215 977 ntBASIC18.4■□□□□ 0.54
HOXC11O43248 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 CROCCP3-202ENST00000420820 1947 ntBASIC18.4■□□□□ 0.54
HOXC11O43248 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
HOXC11O43248 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC11O43248 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC11O43248 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HOXC11O43248 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC11O43248 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
HOXC11O43248 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
HOXC11O43248 AC018445.3-201ENST00000624177 1945 ntBASIC18.39■□□□□ 0.53
HOXC11O43248 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HOXC11O43248 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC11O43248 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC11O43248 AC018712.1-201ENST00000455767 687 ntBASIC18.39■□□□□ 0.53
HOXC11O43248 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC11O43248 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC11O43248 MTDHP3-201ENST00000594186 672 ntBASIC18.39■□□□□ 0.53
HOXC11O43248 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC11O43248 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.39■□□□□ 0.53
HOXC11O43248 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.39■□□□□ 0.53
HOXC11O43248 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.39■□□□□ 0.53
HOXC11O43248 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC11O43248 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HOXC11O43248 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC11O43248 AC073592.3-201ENST00000625118 1834 ntBASIC18.38■□□□□ 0.53
HOXC11O43248 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
HOXC11O43248 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC11O43248 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXC11O43248 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.38■□□□□ 0.53
HOXC11O43248 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.38■□□□□ 0.53
HOXC11O43248 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 AL031284.1-201ENST00000419297 478 ntBASIC18.38■□□□□ 0.53
HOXC11O43248 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC11O43248 ABCD1P5-201ENST00000445663 754 ntBASIC18.38■□□□□ 0.53
HOXC11O43248 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC11O43248 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC11O43248 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HOXC11O43248 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC11O43248 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.38■□□□□ 0.53
HOXC11O43248 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC11O43248 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXC11O43248 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms