Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 IGHV3-72-202ENST00000621503 303 ntBASIC13.96□□□□□ -0.17
COL6A5A8TX70 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC13.96□□□□□ -0.17
COL6A5A8TX70 AL390754.1-201ENST00000619088 582 ntBASIC13.96□□□□□ -0.17
COL6A5A8TX70 REXO1L3P-201ENST00000622202 1288 ntBASIC13.96□□□□□ -0.17
COL6A5A8TX70 NCF1C-201ENST00000438382 1427 ntBASIC13.96□□□□□ -0.17
COL6A5A8TX70 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL6A5A8TX70 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
COL6A5A8TX70 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC13.96□□□□□ -0.18
COL6A5A8TX70 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
COL6A5A8TX70 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC13.96□□□□□ -0.18
COL6A5A8TX70 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 TIMM8BP1-201ENST00000452384 211 ntBASIC13.95□□□□□ -0.18
COL6A5A8TX70 STK25-234ENST00000535007 2459 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 AC003669.1-201ENST00000334569 611 ntBASIC13.95□□□□□ -0.18
COL6A5A8TX70 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC13.95□□□□□ -0.18
COL6A5A8TX70 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL6A5A8TX70 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 KLF2P3-201ENST00000451977 1087 ntBASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC074386.1-202ENST00000463561 864 ntBASIC13.94□□□□□ -0.18
COL6A5A8TX70 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 RPL28-209ENST00000560055 670 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC004790.2-201ENST00000623588 572 ntBASIC13.94□□□□□ -0.18
COL6A5A8TX70 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 ADK-206ENST00000541550 2222 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL6A5A8TX70 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.94□□□□□ -0.18
COL6A5A8TX70 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC13.93□□□□□ -0.18
COL6A5A8TX70 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL6A5A8TX70 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms