Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 DUT-205ENST00000558813 769 ntTSL 2 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 AC012306.2-201ENST00000609350 630 ntBASIC14.71□□□□□ -0.05
FOXA2Q9Y261 AC005363.2-201ENST00000618631 242 ntBASIC14.71□□□□□ -0.05
FOXA2Q9Y261 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
FOXA2Q9Y261 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.71□□□□□ -0.06
FOXA2Q9Y261 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.71□□□□□ -0.06
FOXA2Q9Y261 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
FOXA2Q9Y261 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 AC036111.1-201ENST00000533973 1582 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 SLC25A3P1-201ENST00000443844 931 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 ATP5G1P1-201ENST00000448724 379 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 MIR4674-201ENST00000582457 87 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 SDHAP2-201ENST00000455183 2001 ntBASIC14.7□□□□□ -0.06
FOXA2Q9Y261 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
FOXA2Q9Y261 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 KRT8P7-201ENST00000533003 1432 ntBASIC14.69□□□□□ -0.06
FOXA2Q9Y261 HOXB1-202ENST00000577092 1414 ntBASIC14.69□□□□□ -0.06
FOXA2Q9Y261 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA2Q9Y261 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA2Q9Y261 AC113347.1-201ENST00000413321 391 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms