Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 FAM197Y8-203ENST00000450145 560 ntBASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 AL592071.1-201ENST00000611956 408 ntBASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
NOTCH3Q9UM47 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 MIR564-202ENST00000385049 94 ntBASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 AC027601.4-201ENST00000611259 610 ntBASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NOTCH3Q9UM47 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 VENTXP7-201ENST00000475503 772 ntBASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 AC024563.2-201ENST00000603282 481 ntBASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 AC006333.2-201ENST00000607957 2099 ntBASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 BNIP3P18-201ENST00000593976 575 ntBASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
NOTCH3Q9UM47 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 TEX21P-204ENST00000641479 1693 ntBASIC14□□□□□ -0.17
NOTCH3Q9UM47 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 AC243591.1-201ENST00000452967 1364 ntBASIC14□□□□□ -0.17
NOTCH3Q9UM47 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 AC079776.4-201ENST00000511039 504 ntBASIC14□□□□□ -0.17
NOTCH3Q9UM47 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 FICD-205ENST00000552758 603 ntTSL 2 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14□□□□□ -0.17
NOTCH3Q9UM47 AL512353.2-201ENST00000448759 1962 ntBASIC14□□□□□ -0.17
NOTCH3Q9UM47 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC14□□□□□ -0.17
NOTCH3Q9UM47 NSUN5P1-202ENST00000421140 1535 ntBASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms