Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28BQ9BUN5 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28BQ9BUN5 GPAT2P1-201ENST00000444924 1672 ntBASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 AL353807.1-201ENST00000427475 662 ntBASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 AL121761.2-201ENST00000598007 1648 ntBASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC28BQ9BUN5 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 AC011506.1-201ENST00000474329 610 ntBASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 AC104771.1-201ENST00000603335 964 ntBASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 AC011676.5-201ENST00000624864 2660 ntBASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28BQ9BUN5 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28BQ9BUN5 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms