Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AL590627.1-203ENST00000421194 1026 ntBASIC17.65■□□□□ 0.42
LMX1AQ8TE12 KRT18P65-201ENST00000439811 1286 ntBASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AP001005.1-201ENST00000571755 1248 ntBASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.65■□□□□ 0.42
LMX1AQ8TE12 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.64■□□□□ 0.42
LMX1AQ8TE12 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LMX1AQ8TE12 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 AF186996.4-201ENST00000467186 377 ntBASIC17.64■□□□□ 0.41
LMX1AQ8TE12 AL773604.1-201ENST00000617417 272 ntBASIC17.64■□□□□ 0.41
LMX1AQ8TE12 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.64■□□□□ 0.41
LMX1AQ8TE12 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 GMCL1P1-201ENST00000463439 1581 ntBASIC17.63■□□□□ 0.41
LMX1AQ8TE12 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 KRT18P67-201ENST00000432816 1264 ntBASIC17.63■□□□□ 0.41
LMX1AQ8TE12 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 AL138831.2-201ENST00000606564 490 ntBASIC17.63■□□□□ 0.41
LMX1AQ8TE12 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.63■□□□□ 0.41
LMX1AQ8TE12 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LMX1AQ8TE12 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms