Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.04■□□□□ 0.32
CLIP4Q8N3C7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AC046158.3-201ENST00000624947 2558 ntBASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AL390955.1-201ENST00000428694 934 ntBASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 MIR3180-5-201ENST00000583743 153 ntBASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AP000525.1-201ENST00000608286 694 ntBASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.03■□□□□ 0.32
CLIP4Q8N3C7 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AC036111.1-201ENST00000533973 1582 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AC141586.5-201ENST00000624546 2050 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AP000593.1-201ENST00000393668 712 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 AP003041.3-201ENST00000527151 707 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 MIR4785-201ENST00000585005 73 ntBASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.02■□□□□ 0.32
CLIP4Q8N3C7 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CLIP4Q8N3C7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 SNORA78-201ENST00000459373 127 ntBASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CLIP4Q8N3C7 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms