Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC14.65□□□□□ -0.06
CX3CL1P78423 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CX3CL1P78423 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.65□□□□□ -0.06
CX3CL1P78423 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 AC104390.1-201ENST00000555663 520 ntBASIC14.65□□□□□ -0.06
CX3CL1P78423 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CX3CL1P78423 AC024243.1-201ENST00000609234 778 ntBASIC14.65□□□□□ -0.06
CX3CL1P78423 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.65□□□□□ -0.06
CX3CL1P78423 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CX3CL1P78423 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CX3CL1P78423 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 AL163051.1-201ENST00000569214 1512 ntBASIC14.65□□□□□ -0.06
CX3CL1P78423 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.65□□□□□ -0.06
CX3CL1P78423 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CX3CL1P78423 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CX3CL1P78423 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.07
CX3CL1P78423 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.64□□□□□ -0.07
CX3CL1P78423 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 TERF1P1-201ENST00000311003 1181 ntBASIC14.64□□□□□ -0.07
CX3CL1P78423 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
CX3CL1P78423 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.64□□□□□ -0.07
CX3CL1P78423 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.64□□□□□ -0.07
CX3CL1P78423 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CX3CL1P78423 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.63□□□□□ -0.07
CX3CL1P78423 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.63□□□□□ -0.07
CX3CL1P78423 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CX3CL1P78423 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CL1P78423 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CL1P78423 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CL1P78423 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CX3CL1P78423 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CX3CL1P78423 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.63□□□□□ -0.07
CX3CL1P78423 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms