Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.23■□□□□ 0.35
RAE1P78406 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RAE1P78406 AC073508.3-201ENST00000619697 1419 ntBASIC17.23■□□□□ 0.35
RAE1P78406 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.23■□□□□ 0.35
RAE1P78406 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 AC100803.2-201ENST00000562459 1963 ntBASIC17.23■□□□□ 0.35
RAE1P78406 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RAE1P78406 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.23■□□□□ 0.35
RAE1P78406 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.23■□□□□ 0.35
RAE1P78406 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.23■□□□□ 0.35
RAE1P78406 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RAE1P78406 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.23■□□□□ 0.35
RAE1P78406 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
RAE1P78406 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.22■□□□□ 0.35
RAE1P78406 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.22■□□□□ 0.35
RAE1P78406 TERF1P1-201ENST00000311003 1181 ntBASIC17.22■□□□□ 0.35
RAE1P78406 AC113347.1-201ENST00000413321 391 ntBASIC17.22■□□□□ 0.35
RAE1P78406 LIN28AP1-201ENST00000429574 405 ntBASIC17.22■□□□□ 0.35
RAE1P78406 RASA4DP-201ENST00000460726 1199 ntBASIC17.22■□□□□ 0.35
RAE1P78406 COX11P1-201ENST00000489116 835 ntBASIC17.22■□□□□ 0.35
RAE1P78406 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.22■□□□□ 0.35
RAE1P78406 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.22■□□□□ 0.35
RAE1P78406 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.22■□□□□ 0.35
RAE1P78406 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.22■□□□□ 0.35
RAE1P78406 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.22■□□□□ 0.35
RAE1P78406 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RAE1P78406 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
RAE1P78406 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RAE1P78406 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.22■□□□□ 0.35
RAE1P78406 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.21■□□□□ 0.35
RAE1P78406 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.21■□□□□ 0.35
RAE1P78406 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
RAE1P78406 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
RAE1P78406 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
RAE1P78406 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.21■□□□□ 0.35
RAE1P78406 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 AC034232.1-201ENST00000506026 1064 ntBASIC17.21■□□□□ 0.35
RAE1P78406 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 AC140113.3-201ENST00000605663 199 ntBASIC17.21■□□□□ 0.35
RAE1P78406 AC011558.1-201ENST00000623459 338 ntBASIC17.21■□□□□ 0.35
RAE1P78406 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RAE1P78406 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
RAE1P78406 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.21■□□□□ 0.35
RAE1P78406 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.21■□□□□ 0.35
RAE1P78406 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
RAE1P78406 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RAE1P78406 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
RAE1P78406 LINC00602-201ENST00000629776 2065 ntBASIC17.2■□□□□ 0.34
RAE1P78406 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.2■□□□□ 0.34
RAE1P78406 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.2■□□□□ 0.34
RAE1P78406 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
RAE1P78406 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RAE1P78406 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.2■□□□□ 0.34
RAE1P78406 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
RAE1P78406 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
RAE1P78406 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RAE1P78406 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RAE1P78406 AL391807.1-203ENST00000604392 2365 ntBASIC17.2■□□□□ 0.34
RAE1P78406 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RAE1P78406 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms