Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC034105.1-201ENST00000563488 319 ntBASIC20.89■□□□□ 0.93
HMGCS2P54868 NKAPP1-205ENST00000585790 367 ntBASIC20.89■□□□□ 0.93
HMGCS2P54868 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGCS2P54868 AC140113.2-201ENST00000604370 208 ntBASIC20.89■□□□□ 0.93
HMGCS2P54868 AC027601.4-201ENST00000611259 610 ntBASIC20.89■□□□□ 0.93
HMGCS2P54868 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.89■□□□□ 0.93
HMGCS2P54868 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGCS2P54868 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGCS2P54868 AL139288.1-201ENST00000623748 933 ntBASIC20.89■□□□□ 0.93
HMGCS2P54868 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGCS2P54868 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGCS2P54868 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGCS2P54868 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGCS2P54868 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGCS2P54868 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 ANO7L1-203ENST00000602586 1720 ntBASIC20.88■□□□□ 0.93
HMGCS2P54868 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.88■□□□□ 0.93
HMGCS2P54868 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.88■□□□□ 0.93
HMGCS2P54868 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGCS2P54868 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.88■□□□□ 0.93
HMGCS2P54868 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.88■□□□□ 0.93
HMGCS2P54868 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
HMGCS2P54868 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGCS2P54868 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGCS2P54868 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 MED15P5-201ENST00000423150 992 ntBASIC20.87■□□□□ 0.93
HMGCS2P54868 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 RNA5SP415-201ENST00000517246 115 ntBASIC20.87■□□□□ 0.93
HMGCS2P54868 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.87■□□□□ 0.93
HMGCS2P54868 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 MTDHP4-201ENST00000600287 670 ntBASIC20.87■□□□□ 0.93
HMGCS2P54868 AL356488.2-201ENST00000602755 427 ntBASIC20.87■□□□□ 0.93
HMGCS2P54868 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 AC008735.5-201ENST00000623544 497 ntBASIC20.87■□□□□ 0.93
HMGCS2P54868 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGCS2P54868 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGCS2P54868 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGCS2P54868 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HMGCS2P54868 AC132938.6-201ENST00000623828 1655 ntBASIC20.86■□□□□ 0.93
HMGCS2P54868 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGCS2P54868 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HMGCS2P54868 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.86■□□□□ 0.93
HMGCS2P54868 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.86■□□□□ 0.93
HMGCS2P54868 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 AC092183.1-201ENST00000469884 875 ntBASIC20.86■□□□□ 0.93
HMGCS2P54868 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HMGCS2P54868 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGCS2P54868 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGCS2P54868 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGCS2P54868 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGCS2P54868 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGCS2P54868 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGCS2P54868 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
HMGCS2P54868 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
HMGCS2P54868 FAM220CP-201ENST00000395253 831 ntBASIC20.85■□□□□ 0.93
HMGCS2P54868 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.85■□□□□ 0.93
HMGCS2P54868 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGCS2P54868 AC007967.3-201ENST00000434308 558 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms