Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
BDNFP23560 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.1■□□□□ 0.65
BDNFP23560 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
BDNFP23560 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
BDNFP23560 IGHV3-47-201ENST00000425060 335 ntBASIC19.1■□□□□ 0.65
BDNFP23560 FOSL1P1-201ENST00000511041 816 ntBASIC19.1■□□□□ 0.65
BDNFP23560 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.1■□□□□ 0.65
BDNFP23560 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.1■□□□□ 0.65
BDNFP23560 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.1■□□□□ 0.65
BDNFP23560 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
BDNFP23560 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BDNFP23560 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.09■□□□□ 0.65
BDNFP23560 AC132938.6-201ENST00000623828 1655 ntBASIC19.09■□□□□ 0.65
BDNFP23560 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 AC246785.2-201ENST00000432512 513 ntBASIC19.09■□□□□ 0.65
BDNFP23560 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.09■□□□□ 0.65
BDNFP23560 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 AC099336.1-202ENST00000602961 463 ntBASIC19.09■□□□□ 0.65
BDNFP23560 AL353801.3-201ENST00000609898 542 ntBASIC19.09■□□□□ 0.65
BDNFP23560 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
BDNFP23560 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.09■□□□□ 0.65
BDNFP23560 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BDNFP23560 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
BDNFP23560 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.08■□□□□ 0.65
BDNFP23560 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
BDNFP23560 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.08■□□□□ 0.65
BDNFP23560 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BDNFP23560 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.08■□□□□ 0.65
BDNFP23560 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.08■□□□□ 0.64
BDNFP23560 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
BDNFP23560 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.08■□□□□ 0.64
BDNFP23560 KRT18P65-201ENST00000439811 1286 ntBASIC19.08■□□□□ 0.64
BDNFP23560 MTCL1P1-201ENST00000446207 792 ntBASIC19.08■□□□□ 0.64
BDNFP23560 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.08■□□□□ 0.64
BDNFP23560 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.08■□□□□ 0.64
BDNFP23560 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.08■□□□□ 0.64
BDNFP23560 AL121894.2-201ENST00000602977 491 ntBASIC19.08■□□□□ 0.64
BDNFP23560 AC138894.3-201ENST00000603787 634 ntBASIC19.08■□□□□ 0.64
BDNFP23560 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.08■□□□□ 0.64
BDNFP23560 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.08■□□□□ 0.64
BDNFP23560 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
BDNFP23560 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
BDNFP23560 NSUN5P1-202ENST00000421140 1535 ntBASIC19.08■□□□□ 0.64
BDNFP23560 NSUN5P2-203ENST00000457352 1529 ntBASIC19.08■□□□□ 0.64
BDNFP23560 AC104581.1-202ENST00000635932 2618 ntBASIC19.08■□□□□ 0.64
BDNFP23560 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
BDNFP23560 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.08■□□□□ 0.64
BDNFP23560 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
BDNFP23560 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
BDNFP23560 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
BDNFP23560 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
BDNFP23560 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.07■□□□□ 0.64
BDNFP23560 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
BDNFP23560 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms