Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A1P12109 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A1P12109 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A1P12109 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A1P12109 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A1P12109 SDHAP2-201ENST00000455183 2001 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.98■□□□□ 0.79
COL6A1P12109 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A1P12109 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 MIR770-201ENST00000390219 98 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A1P12109 CNN2P11-201ENST00000429351 262 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 AC073592.4-201ENST00000623827 446 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 C20orf181-201ENST00000623918 480 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A1P12109 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.98■□□□□ 0.79
COL6A1P12109 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
COL6A1P12109 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A1P12109 RNF165-205ENST00000588679 2904 ntBASIC19.98■□□□□ 0.79
COL6A1P12109 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.98■□□□□ 0.79
COL6A1P12109 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
COL6A1P12109 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.97■□□□□ 0.79
COL6A1P12109 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.97■□□□□ 0.79
COL6A1P12109 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.97■□□□□ 0.79
COL6A1P12109 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
COL6A1P12109 BX005266.1-201ENST00000473402 457 ntBASIC19.97■□□□□ 0.79
COL6A1P12109 AC006557.2-201ENST00000592985 1240 ntBASIC19.97■□□□□ 0.79
COL6A1P12109 AC092865.6-201ENST00000642101 219 ntBASIC19.97■□□□□ 0.79
COL6A1P12109 LINC00602-201ENST00000629776 2065 ntBASIC19.97■□□□□ 0.79
COL6A1P12109 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A1P12109 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.97■□□□□ 0.79
COL6A1P12109 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A1P12109 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 AL032819.2-201ENST00000624543 2162 ntBASIC19.96■□□□□ 0.79
COL6A1P12109 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.96■□□□□ 0.79
COL6A1P12109 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.96■□□□□ 0.79
COL6A1P12109 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.96■□□□□ 0.79
COL6A1P12109 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 KRT18P65-201ENST00000439811 1286 ntBASIC19.96■□□□□ 0.79
COL6A1P12109 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.96■□□□□ 0.79
COL6A1P12109 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL6A1P12109 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
COL6A1P12109 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A1P12109 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A1P12109 AL158211.5-201ENST00000623583 2518 ntBASIC19.96■□□□□ 0.79
COL6A1P12109 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
COL6A1P12109 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A1P12109 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
COL6A1P12109 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A1P12109 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A1P12109 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.95■□□□□ 0.78
COL6A1P12109 AC136632.2-201ENST00000512891 861 ntBASIC19.95■□□□□ 0.78
COL6A1P12109 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.95■□□□□ 0.78
COL6A1P12109 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A1P12109 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.95■□□□□ 0.78
COL6A1P12109 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.95■□□□□ 0.78
COL6A1P12109 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A1P12109 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
COL6A1P12109 AC097374.2-201ENST00000618617 1306 ntBASIC19.95■□□□□ 0.78
COL6A1P12109 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms