Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
MMP3P08254 AC126763.1-201ENST00000552015 2118 ntBASIC20.03■□□□□ 0.8
MMP3P08254 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.03■□□□□ 0.8
MMP3P08254 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 RPS2P28-201ENST00000314255 741 ntBASIC20.03■□□□□ 0.8
MMP3P08254 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
MMP3P08254 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.03■□□□□ 0.8
MMP3P08254 POLD2P1-201ENST00000511220 997 ntBASIC20.03■□□□□ 0.8
MMP3P08254 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
MMP3P08254 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP3P08254 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MMP3P08254 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.03■□□□□ 0.8
MMP3P08254 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
MMP3P08254 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MMP3P08254 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.02■□□□□ 0.8
MMP3P08254 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.02■□□□□ 0.8
MMP3P08254 AC025062.2-201ENST00000605477 670 ntBASIC20.02■□□□□ 0.8
MMP3P08254 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
MMP3P08254 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.02■□□□□ 0.8
MMP3P08254 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP3P08254 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.02■□□□□ 0.79
MMP3P08254 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.02■□□□□ 0.79
MMP3P08254 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.01■□□□□ 0.79
MMP3P08254 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.01■□□□□ 0.79
MMP3P08254 FAM220CP-201ENST00000395253 831 ntBASIC20.01■□□□□ 0.79
MMP3P08254 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
MMP3P08254 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 AC007967.3-201ENST00000434308 558 ntBASIC20.01■□□□□ 0.79
MMP3P08254 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.01■□□□□ 0.79
MMP3P08254 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.01■□□□□ 0.79
MMP3P08254 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.01■□□□□ 0.79
MMP3P08254 AL139288.1-201ENST00000623748 933 ntBASIC20.01■□□□□ 0.79
MMP3P08254 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.01■□□□□ 0.79
MMP3P08254 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.01■□□□□ 0.79
MMP3P08254 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP3P08254 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP3P08254 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
MMP3P08254 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20■□□□□ 0.79
MMP3P08254 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20■□□□□ 0.79
MMP3P08254 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20■□□□□ 0.79
MMP3P08254 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20■□□□□ 0.79
MMP3P08254 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20■□□□□ 0.79
MMP3P08254 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20■□□□□ 0.79
MMP3P08254 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MMP3P08254 AC097374.2-201ENST00000618617 1306 ntBASIC20■□□□□ 0.79
MMP3P08254 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP3P08254 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.99■□□□□ 0.79
MMP3P08254 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.99■□□□□ 0.79
MMP3P08254 ZNF259P1-201ENST00000407656 1365 ntBASIC19.99■□□□□ 0.79
MMP3P08254 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP3P08254 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms