Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 AC018470.1-201ENST00000624790 3129 ntBASIC19.03■□□□□ 0.64
APOEP02649 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
APOEP02649 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.03■□□□□ 0.64
APOEP02649 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
APOEP02649 AL645929.1-201ENST00000420084 975 ntBASIC19.03■□□□□ 0.64
APOEP02649 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.03■□□□□ 0.64
APOEP02649 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.03■□□□□ 0.64
APOEP02649 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.03■□□□□ 0.64
APOEP02649 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
APOEP02649 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
APOEP02649 AC099343.3-201ENST00000605834 2503 ntBASIC19.03■□□□□ 0.64
APOEP02649 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
APOEP02649 NOC2LP1-202ENST00000452600 2235 ntBASIC19.02■□□□□ 0.64
APOEP02649 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
APOEP02649 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 SDHAP2-201ENST00000455183 2001 ntBASIC19.02■□□□□ 0.64
APOEP02649 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
APOEP02649 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.02■□□□□ 0.64
APOEP02649 SPDYE13P-201ENST00000445314 798 ntBASIC19.02■□□□□ 0.64
APOEP02649 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
APOEP02649 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.02■□□□□ 0.64
APOEP02649 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.02■□□□□ 0.64
APOEP02649 FAM86EP-206ENST00000510506 987 ntBASIC19.02■□□□□ 0.64
APOEP02649 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.02■□□□□ 0.64
APOEP02649 AC091076.1-201ENST00000610741 619 ntBASIC19.02■□□□□ 0.64
APOEP02649 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.02■□□□□ 0.64
APOEP02649 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.02■□□□□ 0.64
APOEP02649 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
APOEP02649 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.02■□□□□ 0.63
APOEP02649 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
APOEP02649 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
APOEP02649 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
APOEP02649 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 AC005332.1-201ENST00000577698 1310 ntBASIC19.01■□□□□ 0.63
APOEP02649 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
APOEP02649 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.01■□□□□ 0.63
APOEP02649 PCED1CP-201ENST00000419887 785 ntBASIC19.01■□□□□ 0.63
APOEP02649 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.01■□□□□ 0.63
APOEP02649 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 AC008687.5-201ENST00000593746 558 ntBASIC19.01■□□□□ 0.63
APOEP02649 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.01■□□□□ 0.63
APOEP02649 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 AL358472.4-201ENST00000633140 710 ntBASIC19.01■□□□□ 0.63
APOEP02649 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.01■□□□□ 0.63
APOEP02649 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.01■□□□□ 0.63
APOEP02649 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.01■□□□□ 0.63
APOEP02649 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
APOEP02649 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
APOEP02649 LETM1P2-201ENST00000597330 2178 ntBASIC19■□□□□ 0.63
APOEP02649 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19■□□□□ 0.63
APOEP02649 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
APOEP02649 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19■□□□□ 0.63
APOEP02649 MIR662-201ENST00000384847 95 ntBASIC19■□□□□ 0.63
APOEP02649 KRT18P48-201ENST00000434763 852 ntBASIC19■□□□□ 0.63
APOEP02649 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19■□□□□ 0.63
APOEP02649 AC024563.2-201ENST00000603282 481 ntBASIC19■□□□□ 0.63
APOEP02649 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
APOEP02649 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms