Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
USH2AO75445 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
USH2AO75445 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 Six3os1_5.1-201ENST00000611000 271 ntBASIC8.04□□□□□ -1.12
USH2AO75445 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 FAM207CP-201ENST00000443486 507 ntBASIC8.04□□□□□ -1.12
USH2AO75445 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC8.04□□□□□ -1.12
USH2AO75445 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 BCAR1-209ENST00000546196 1340 ntBASIC8.04□□□□□ -1.12
USH2AO75445 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC8.04□□□□□ -1.12
USH2AO75445 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC8.04□□□□□ -1.12
USH2AO75445 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
USH2AO75445 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC8.04□□□□□ -1.12
USH2AO75445 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC8.04□□□□□ -1.12
USH2AO75445 RHOQP3-201ENST00000437982 621 ntBASIC8.04□□□□□ -1.12
USH2AO75445 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC8.04□□□□□ -1.12
USH2AO75445 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC8.04□□□□□ -1.12
USH2AO75445 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC8.03□□□□□ -1.12
USH2AO75445 AC007967.3-201ENST00000434308 558 ntBASIC8.03□□□□□ -1.12
USH2AO75445 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC8.03□□□□□ -1.12
USH2AO75445 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC8.03□□□□□ -1.12
USH2AO75445 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC8.03□□□□□ -1.12
USH2AO75445 RIN3-211ENST00000557762 517 ntTSL 3 BASIC8.03□□□□□ -1.12
USH2AO75445 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
USH2AO75445 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 CU639417.3-201ENST00000624240 1404 ntBASIC8.03□□□□□ -1.12
USH2AO75445 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 NABP1-203ENST00000409510 843 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 AC074386.1-202ENST00000463561 864 ntBASIC8.03□□□□□ -1.12
USH2AO75445 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 AL589182.2-201ENST00000619332 1049 ntBASIC8.03□□□□□ -1.12
USH2AO75445 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 PWWP2AP1-201ENST00000429776 2273 ntBASIC8.03□□□□□ -1.12
USH2AO75445 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 MIR658-201ENST00000385210 100 ntBASIC8.03□□□□□ -1.12
USH2AO75445 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC8.03□□□□□ -1.12
USH2AO75445 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
USH2AO75445 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
USH2AO75445 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms